## simulateDatExpr: simulating 500 genes in 5 modules.
## simulateDatExpr: simulating 500 genes in 5 modules.
## truemodule1
## truemodule0 0 1 2 3 4 5
## 0 125 0 0 75 75 0
## 1 0 75 0 0 0 0
## 2 0 0 75 0 0 0
## 5 0 0 0 0 0 75
## [1] 100 500
## TOM calculation: adjacency..
## adjacency: replaceMissing: 0
## ..will not use multithreading.
## Fraction of slow calculations: 0.000000
## ..connectivity..
## ..matrix multiplication..
## ..normalization..
## ..done.
## TOM calculation: adjacency..
## adjacency: replaceMissing: 0
## ..will not use multithreading.
## Fraction of slow calculations: 0.000000
## ..connectivity..
## ..matrix multiplication..
## ..normalization..
## ..done.
## TOM calculation: adjacency..
## adjacency: replaceMissing: 0
## ..will not use multithreading.
## Fraction of slow calculations: 0.000000
## ..connectivity..
## ..matrix multiplication..
## ..normalization..
## ..done.
Heatmaps of Correlations
All

E=0

E=1

E=1 - E=0

\(S = |\rho_{E=0} + \rho_{E=1} - 1.5 \rho|\)

Fisher’s Z Statistic

Heatmaps of TOM
All

E=0

E=1

E=1 - E=0

\(S = |TOM_{E=0} + TOM_{E=1} - 1.5 TOM|\)
